Tool name | Bambino |
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URL | https://cgwb.nci.nih.gov/goldenPath/bamview/documentation/index.html |
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Important features | 1. Capable of pooling data from multiple source files.
2. It has graphical viewer and SNP/indel detector.
3. Displays mappings of dbSNP SNP sites and reference protein sequences, using UCSC genome annotations.
4. Calculates protein coding changes caused by SNPs in NCBI RefSeqs. |
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Citations | Edmonson MN, Zhang J, Yan C, Finney RP, Meerzaman DM, Buetow KH. Bambino: a variant detector and alignment viewer for next-generation sequencing data in the SAM/BAM format. Bioinformatics. 2011 Mar 15;27(6):865-6. Epub 2011 Jan 28. PubMed PMID: 21278191; PubMed Central PMCID: PMC3051333. |
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Year of publication | 2011 |
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Rank by usage frequency | 100 |
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Comments | |
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Function | SNP discovery, Indel discovery |
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Category | Downloadable |
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License | |
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Status | |
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Input file format | SAM, BAM |
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Output file format | |
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Operating system | Windows 32/64bit
Linux/Unix 32/64bit
Mac OS X 32/64bit |
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Operating language | Java |
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Platform | |
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Maintained by | Baylor College of Medicine Human Genome Sequencing Center
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Downloadable file format | |
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Submission file format | |
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